jmg421

5 ms·

1. 1.▲
   by jmg421 1y ago

   Thank you for commenting and for the amazing work you did to get Cytoscape off the ground. If it weren't for your work, nodes.bio would not have been possible! -John
2. 2.▲
   by jmg421 1y ago

   Here's the API! https://api.nodes.bio/docs/index.html
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   by jmg421 1y ago

   At its heart, the Nodes.bio API addresses a fundamental gap in biological data accessibility. While vast repositories of biological information exist, they often remain siloed and difficult to manipulate programmatically. Our API transforms
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   by jmg421 1y ago

   Hey @JayEquilibria — thanks again for your thoughtful comment! I used to share some of your skepticism — a lot of network visualizations do feel like scientistic performance art. That started to shift for me after discovering NFX and readin
5. 5.▲
   by jmg421 1y ago

   @JayEquilibria- This is a great comment, thanks so much, it helps tremendously. I will reply separately in a more comprehensive way :-).
6. 6.▲
   by jmg421 1y ago

   UPDATE: I've added a quick demo page for mobile at https://nodes.bio/mobile/ . The mobile page now showcases three major network visualizations: TBI Nasal Spray Mechanism - Shows molecular pathways and drug delive
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   by jmg421 1y ago

   Check out https://nodes.bio/mobile/
8. 8.▲
   by jmg421 1y ago

   thanks for the feedback. I'm working on this right now.
9. 9.▲
   by jmg421 1y ago

   It's back up, thanks for checking it out!
10. 10.▲
    by jmg421 1y ago

    It's back up, thanks for checking it out!
11. 11.▲
    by jmg421 1y ago

    Update on the 502s- looks like it was a memory issue during an overnight deployment. I'm working on getting a proper staging environment running. Sorry for the inconvenience!
12. 12.▲
    by jmg421 1y ago

    It should be back up momentarily- I think I had a deployment issue while I was working on the mobile experience.
13. 13.▲
    by jmg421 1y ago

    Not sure what happened, it should be back up momentarily. Thanks for having a look at it!
14. 14.▲
    by jmg421 1y ago

    Thanks for the feedback... this is one of the top items I'm working on!
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    by jmg421 1y ago

    I wanted to share why I built this - it's deeply personal. In 2020, my mother was diagnosed with glioblastoma. As I navigated her treatment, I found myself completely overwhelmed by the complexity of biological networks. The medical li
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    by jmg421 1y ago

    The current demo shows a simplified view, but the tool can handle much more granular relationships. I have some glioblastoma and pancreatic cancer networks with protein-protein interactions, phosphorylation events, and pathway cross-talk th
17. 17.▲
    by jmg421 1y ago

    Thank you for the feedback! You're absolutely right about the mobile experience - I need to fix that "Interactive Mobile Experience" card. The mobile version is indeed broken right now, and I should have been clearer about th
18. 18.▲
    Show HN: I built a biological network visualization tool(nodes.bio)

    39 points by jmg421 1y ago|28 comments