armish

4 ms·

1.
by armish 8y ago
ICYMI, iGEM organization's overall goal and the projects that are carried out as part of the annual competitions are highly related to this topic: http://igem.org/Main_Page In general, it is hard to find a biological s
2.
Get your genome sequenced for $50 (U.S. only)(seeq.io)
1 points by armish 10y ago|1 comments
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by armish 11y ago
There are many suggestions here, but make sure to check Cancer Commons community out as they are trying to help patients and their close relatives for exactly this type of queries: https://www.cancercommons.org/home
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by armish 12y ago
I know, right? I was really happy when I learned that this branch of the CS is also referred to as evolutionary, because I was inspired by the evFold approach, which is related to evolution in multiple organisms. This is a bit confusing for
5.
by armish 12y ago
cool! Thanks for sharing the link to your project. I am not really a Ruby expert, so wasn't able to figure out how you calculate the couplings. I will be more than happy to compare the results across these two tools.
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by armish 12y ago
The PDFs that come out of igraph layout are not that pretty. The screenshots I used on the blog post are generated with Cytoscape 3.1.1, which gives better layout and better styling options. For Angular.js, I went with "partialCorrelat
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by armish 12y ago
let me know if you find points that can be improved; I would be more than glad to pull your changes in to the main repository. Thanks for trying this out.
8.
by armish 12y ago
that is partially true: single file apps will never have couplings in this manner. One extension to this project would be to find couplings between particular regions of the file and then even single file apps will start falling down. I thi
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by armish 12y ago
right now, it is not really tied to GitHub; but only expects you to give a git repository URL. Coupling it GitHub will allow more information on the system, for example knowledge on commits that resolve issues on the tracker. That is a long
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by armish 12y ago
Thanks for the pointer; didn't know about that plug-in. As a long term Intellij Idea user, implementing this as a plug-in to Intellij is one of the things I would like to do in the short term. Would be really great to make the tool let
11.
by armish 12y ago
agreed; those kind of linkages are not necessarily due to bad design but are, on the contrary, intrinsic to the design of the language you code in. Ideally I should consider these kind of things and exclude such pairs (X.cpp <-> X.h)
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Evolutionary couplings between files reveal poor software design choices(ergoso.me)
242 points by armish 12y ago|82 comments